Diversity Collection

Identification

Each organism or unit may have been identified several times. The identifications are listed in the tree under the organism as shown in the image below. To create a new identification choose the organism from the tree and click on the identification icon. The last identification will always be taken as the valid one and set at the top of the list. To insert an older identification at the base of the list click on the identification to base icon.

 

To hide / show the identifications in the tree click on the identification icon on the right panel next to the tree. To enter a confirmation of an identification choose it in the tree and then click on the confirmation button. To move an identification to the end or the start of the list use the identification down or identification up button respectively. To delete an identification select it in the tree and click the delete button. To enter details for an identification choose it in the tree. You can then enter the details in the form opening on the right side of the tree as shown below.

 

The taxonomic name of an organism can be selected from either the names already available in DiversityCollection or from the module DiversityTaxonNames. To choose from the local names type the beginning of the name and click on the drop-down button  to get a list of available names. You can use wildcards according to SQL.

To select a taxonomic name from an external database click on the module button. A window will open where you can search for a taxonomic name. For taxonomic names provided by the module DiversityTaxonNames you can use a shortcut. Click on the pin button to set the source in the window that will open. After the source is set, the pin and drop-down box will change their colors as shown below to indicate that the taxonomic names are not longer derived from the content in DiversityCollection but from the selected DiversityTaxonNames database.

The links will be set separate for every taxonomic group and may be changed at any time with a click on the pin button. To release the link to the remote database, click on the  pin button and than select Cancel in the window where you select the database. The pin will change to gray and the data will again be derived from the local values in DiversityCollection.

For identifications linked to a DiversityTaxonNames database you may activate the Show accepted names option. Accepted names will then be shown with a green color while for synonyms the accepted name will be displayed above the current name (see below).

In the database the data for the identification is stored in the table Identification.

Aug 6, 2025

Subsections of Identification

Diversity Collection

Identification

Sources

Diversity Workbench

The source for names for biological taxa is the module DiversityTaxonNames

Webservices

As an alternative to DiversityTaxonNames you may use several Webservices

Catalogue of life

DiversityWorkbench provides the possibility to link your data to an external webservice. The webservice provided by the Catalogue of Life is possible through the module DiversityTaxonNames. To establish a connection to this external webservice click on the DWB button. A window will open where you may choose this webservice (see below).

In the field Name in Query conditions enter your search string and click on the filter button to start the query. In the list of the left upper part the results of the query will be listed. In the right part of the window additional information is shown as provided by the webservice. To include the link from the webservice into your database choose one of the entries in the list and click OK. The entry will change as shown below.

If you double-click on the link area, a window will open providing you with the retrieval information of the webservice (e.g.:https://api.checklistbank.org/dataset/3LR/nameusage/8K9Y). 

To receive the information related to an entry as provided by the webservice click on the button. A window will open as shown below where information on the webservice is listed in the upper part. If available, additional information provided on a corresponding website will be shown in the lower part.

If you wish to remove the link to the webservice, click on the button. This will only remove the relation to the webservice, not the cached name.

Index Fungorum

Some modules within the DiversityWorkbench provide the possibility to link your data to an external webservice. For example DiversityTaxonNames gives you access to the taxonomic names of Index Fungorum. To establish a connection to this webservice, click on the button. A window will open where you may choose Index Fungorum from the database list (see below). 

Enter the query restriction for the name in the Name field in Query conditions. The maximum number of records you receive may be set in the max. results field (choose a low number, if you have a slow connection to the internet). Click on the search button to start the query. In the list in the left upper part the results of the query will be listed. In the right part of the window additional information is shown as provided by the webservice. For certain entries buttons will appear, as e.g. shown above for the basionym and the current name of a scientific name. Click on these buttons, if you wish to change to one of these related data sets from the webservice. If available, the information provided on the corresponding website is shown in the lower part. To include the link from the webservice into your database choose one of the entries and click OK. The entry will change as shown below.

If you double-click on the link area , a window will open providing you with the retrieval information of the webservice. 

To receive the entire information related to this entry as provided by the webservice click on the DWB button. A window will open as shown below where information on the webservice is listed. If available, the lower part will show the corresponding information of a website.

If you wish to remove the link to the webservice, click on the button. This will only remove the relation to the webservice, not the cached name.

Mycobank

Some modules within the DiversityWorkbench provide the possibility to link your data to an external webservice. For example DiversityTaxonNames gives you access to the taxonomic names of Mycobank. To establish a connection to this webservice, click on the button. A window will open where you may choose Mycobank from the database list (see below). 

Enter the query restriction for the name in the Name field in Query conditions. Click on the search button to start the query. In the list in the left upper part the results of the query will be listed. In the right part of the window additional information is shown as provided by the webservice. To include the link from the webservice into your database choose one of the entries and click OK. The entry will change as shown below.

If you double-click on the link area , a window will open providing you with the retrieval information of the webservice. 

To receive the entire information related to this entry as provided by the webservice click on the DWB button. A window will open as shown below where information on the webservice is listed.

If you wish to remove the link to the webservice, click on the button. This will only remove the relation to the webservice, not the cached name.

Pan-European Species directories Infrastructure

Some modules within the DiversityWorkbench provide the possibility to link your data to an external webservice. For example DiversityTaxonNames gives you access to the taxonomic names of the Pan-European Species directories Infrastructure (PESI). To establish a connection to this webservice, click on the button. A window will open where you can choose PESI from the database list (see below). 

Enter the query restriction for the name in the Name field in Query conditions. Click on the search button to start the query. In the list in the left upper part the results of the query will be listed. On the right part of the window additional information is shown as provided by the webservice. If available, the information provided on the corresponding website is shown in the lower part. To include the link from the webservice into your database choose one of the entries and click OK. The entry will change as shown below.

If you double-click on the link area , a window will open providing you with the retrieval information of the webservice. 

To receive the entire information related to this entry as provided by the webservice click on the DWB button. A window will open as shown below where information on the webservice is listed. If available, the lower part will show the corresponding information of a website.

If you wish to remove the link to the webservice, click on the button. This will only remove the relation to the webservice, not the cached name.

Aug 6, 2025

Diversity Collection

Identification

Non biological units

Non biological units like soil, rock or mineral do not have biology related information like a qualifier or a type status. These are therefore not displayed for these groups. Furthermore the source for the names is not DiversityTaxonNames but DiversityScientificTerms (see a short tutorial Video starten, ).

If the source for a non biological unit is set to a DiversityScientificTerms database (see above ) a chart button will appear. With a click on this button you can select the term from a chart as shown below.

In the database the data for the identification is stored in the table Identification.

Aug 6, 2025

Diversity Collection

Identification

Sources for non biological objects

Diversity Workbench

The source for names for non taxonomic objects is the module DiversityScientificNames