Workbench

Diversity Workbench

The Diversity Workbench is composed of components for building and managing biodiversity information, each of which focuses on a particular domain. Each component can provide services to the other components. DiversityDescriptions can link data to the modules DiversityCollection, DiversityTaxonNames, DiversityGazetteers and DiversityReferences as illustrated in the image below. DiversityProjects together with DiversityAgents provide support for administration of data access rights.

 

The modules communicate with each other to provide their services for the other modules.

May 3, 2024

Subsections of Workbench

Module Related Entry

Module related entry

The Diversity Workbench  is a set of components for building and managing biodiversity information, each of which focuses on a particular domain. Each module provides services for the other modules. To use the service of a module, you need access to the database of the module and optionally the module application placed in your application directory. Entries related to an external module have a standard interface in the main form. There are 2 states of this interface:

1 - the value is only set in the local database with no connection to the remote module

In this state, you can either type the value or select it from the values that are already available in the database. To get a list of the available values type the beginning of the value (you may use wildcards) and click on the  button. If you want to set a relation to the remote module, click on the  button. A window will open where you may select an entry from the foreign database.

 

2 - the value is related to the remote module

If the value has a relation to the remote module, the interface will appear as shown above. To release the connection to the remote module click on the button. If you need further information about the value, click on the  button. This will open a form, showing an overview of the related value.

If the client application of the module is available you can inspect the details of the entry.  

 

3 - relation to a webservice

Some modules provide the possibility to link your data to an external webservice. For example DiversityTaxonNames gives you access to the taxonomic names of IndexFungorum. To establish a connection to an external webservice, click on the  button. As with the link to modules within the Diversity Workbench a window will open where you can choose from either Diversity Workbench modules or external Webservices. See Webservice for further details.

Jan 14, 2025

Modules

Modules

The Diversity Workbench  is a set of components for building and managing biodiversity information, each of which focuses on a particular domain. 

DiversityAgents Administration of the agents, i.e. people and institutions which should be documented with e.g. their addresses
<img src=“img/IcoDiversityCollection.gif” data-align=“left”
height=“16” /> DiversityCollection Administration of the scientific collections, specimens within these collections and observations
<img src=“img/IcoDiversityDescriptions.gif” data-align=“left”
height=“16” /> DiversityDescriptions Administration of the descriptive data
<img src=“img/IcoDiversityGazetteer.gif” data-align=“left”
height=“16” /> DiversityGazetteers A data collection to enable the linking of geographical records with the Getty Thesaurus of Geographical Names (TGN), the German GN250 database and other sources of geographical names
DiversityProjects Administration of projects
<img src=“img/IcoDiversityReferences.gif” data-align=“left”
height=“16” /> DiversityReferences Administration of litarature references
<img src=“img/IcoDiversityTaxonNames.gif” data-align=“left”
height=“16” /> DiversityTaxonNames   Administration of taxonomic names, their synonyms and hierarchical position

Each module provides services for the other modules. To use the service of a module, you need access to the database of the module and optionally the module application placed in your application directory. 

May 3, 2024

Webservice

Webservice - foreign sources

Some modules within the Diversity Workbench provide the possibility to link your data to an external webservice. For example DiversityTaxonNames gives you access to the taxonomic names of IndexFungorum. To establish a connection to an external webservice, click on the  button. A window will open where you can choose from either Diversity Workbench modules or external Webservices. Some currently provided webservices are:

The Catalogue of Life

Index Fungorum

Pan-European Species directories Infrastructure

Recent Literature on Lichens

 

Jan 14, 2025

Subsections of Webservice

Webservice Catalogue Of Life

Catalogue of Life - webservice

Diversity Workbench provides the possibility to link your data to an external webservice. The webservice provided by the Catalogue ofLife allows linkage of taxon names. To establish a connection to this external webservice, click on the  button. A window will open where you can choose this webservice (see below). Remark: By selecting “CatalogueOfLife” you can search in the 2014 annual check list, by selecting “CatalogueOfLife_2” you can search in a newed, updated edition, which includes higher taxa.

In the field Name in Query conditions enter you search string and click on the button to start the query. In the list of the left upper part the results of the query will be listed. In the right part of the window additional information is shown as provided by the webservice. If available, the lower part of the window will show the webpage of the related information.

Higher taxa and for synonyms the accepted name will be shown as e.g. shown above. To inspect one of these entries, click on the linked entry of the ID. To take the link from the webservice into your database choose one of the entries in the list and click OK. The entry will change as shown below.

If you double-click on the link area a window will open, providing you with the retrieval information of the webservice. 

To get the information related to an entry as provided by the webservice, click on the  button. A window will open as shown below where the informations of the webservice are listed in the upper part. If available, additional informations provided on a corresponding website will be shown in the lower part.

If you want to remove the link to the webservice, click on the  button. This will only remove the relation to the webservice, not the cached name.

 

 

 

 

 

May 3, 2024

Webservice Index Fungorum

Index Fungorum - webservice

Diversity Workbench provides the possibility to link your data to an external webservice. The webservice provided by the IndexFungorum allows linkage of taxon names. To establish a connection to this external webservice, click on the  button. A window will open where you can choose this webservice (see below). 

Enter the query restriction for the name in the Name field in Query conditions. The maximal number of records you get can be set in the max. results field (choose a low number if you have a slow connection to the internet). Then click on the search button to start the query. In the list of the left upper part the results of the query will be listed. In the right part of the window additional information is shown as provided by the webservice. For certain entries buttons will appear, as e.g. shown above for the basionym and the current name of a scientific name. Click on these buttons if you want to change to one of these related datasets from the webservice. If available, the informations provided on the corresponding website is shown in the lower part. To take the link from the webservice into your database choose one of the entries and click OK. The entry will change as shown below.

If you double-click on the link area a window will open, providing you with the retrieval information of the webservice. 

To get the whole information related to this entry as provided by the webservice, click on the  button. A window will open as shown below where the informations of the webservice are listed, If available, the lower part will show the corresponding informations of a website.

If you want to remove the link to the webservice, click on the the  button. This will only remove the relation to the webservice, not the cached name.

May 3, 2024

Webservice Myco Bank

MycoBank Database - webservice

Some modules within the DiversityWorkbench provide the possibility to link your data to an external webservice. For example DiversityTaxonNames gives you access to the taxonomic names of the MycoBank database. To establish a connection to this webservice, click on the button. A window will open where you can choose MycoBank from the database list (see below). 

Enter the query restriction for the name in the Name field in Query conditions. Click on the search button to start the query. In the list in the left upper part the results of the query will be listed. On the right part of the window additional information is shown as provided by the webservice. If available, the information provided on the corresponding website is shown in the lower part. To include the link from the webservice into your database choose one of the entries and click OK. The entry will change as shown below.

If you double-click on the link area , a window will open providing you with the retrieval information of the webservice. 

To receive the entire information related to this entry as provided by the webservice click on the button. A window will open as shown below where information on the webservice is listed. If available, the lower part will show the corresponding information of a website.

If you wish to remove the link to the webservice, click on the button. This will only remove the relation to the webservice, not the cached name.

May 3, 2024

Webservice Palaeo DB

The Palaeontolgy Database - webservice

Diversity Workbench provides the possibility to link your data to an external webservice. The webservice provided by the PalaeontologyDatabase allows linkage of taxon names. To establish a connection to this external webservice, click on the  button. A window will open where you can choose this webservice (see below).

In the field Name in Query conditions enter you search string and click on the button to start the query. In the list of the left upper part the results of the query will be listed. In the right part of the window additional information is shown as provided by the webservice. The lower part of the window will show the webpage of the related information.

For synonyms, the accepted name will be shown as well as e.g. shown above. To change to the accepted name, click on the linked entry of the ID - in the example above id: 57254. To take the link from the webservice into your database choose one of the entries in the list and click OK. The entry will change as shown below.

If you double-click on the link area a window will open, providing you with the retrieval information of the webservice. 

To get the information related to an entry as provided by the webservice, click on the  button. A window will open as shown below where the informations of the webservice are listed in the upper part. If available, additional informations provided on a corresponding website will be shown in the lower part.

If you want to remove the link to the webservice, click on the  button. This will only remove the relation to the webservice, not the cached name.

 

 

 

 

 

May 3, 2024

Webservice PESI

Pan-European Species directories Infrastructure - webservice

Some modules within the DiversityWorkbench provide the possibility to link your data to an external webservice. For example DiversityTaxonNames gives you access to the taxonomic names of the Pan-European Species directories Infrastructure (PESI). To establish a connection to this webservice, click on the button. A window will open where you can choose PESI from the database list (see below). 

Enter the query restriction for the name in the Name field in Query conditions. Click on the search button to start the query. In the list in the left upper part the results of the query will be listed. On the right part of the window additional information is shown as provided by the webservice. If available, the information provided on the corresponding website is shown in the lower part. To include the link from the webservice into your database choose one of the entries and click OK. The entry will change as shown below.

If you double-click on the link area , a window will open providing you with the retrieval information of the webservice. 

To receive the entire information related to this entry as provided by the webservice click on the button. A window will open as shown below where information on the webservice is listed. If available, the lower part will show the corresponding information of a website.

If you wish to remove the link to the webservice, click on the button. This will only remove the relation to the webservice, not the cached name.

May 3, 2024

Webservice RLL

Recent Literature on Lichens - webservice

Some modules within the DiversityWorkbench provide the possibility to link your data to an external webservice. For example DiversityReferences gives you access to the webservice RecentLiterature on Lichens. To establish a connection to this webservice, click on the button. A window will open where you can choose RLL from the database list (see below). 

Enter the query restriction for the name in the Name field in Query conditions. Click on the search button to start the query. In the list in the left upper part the results of the query will be listed. On the right part of the window additional information is shown as provided by the webservice. If available, the information provided on the corresponding website is shown in the lower part. To include the link from the webservice into your database choose one of the entries and click OK. The entry will change as shown below.

If you double-click on the link area , a window will open providing you with the retrieval information of the webservice. 

To receive the entire information related to this entry as provided by the webservice click on the button. A window will open as shown below where information on the webservice is listed. If available, the lower part will show the corresponding information of a website.

If you wish to remove the link to the webservice, click on the button. This will only remove the relation to the webservice, not the cached name.